OpenREM Release Notes version 0.7.1

Headline changes

  • System

    • Django upgraded to version 1.8
    • Median function added to the database if using PostgreSQL
    • New user-defined display name for each unique system so that rooms with the same DICOM station name are displayed separately
    • Patient name and ID can optionally be stored in system, available for searching and export, but not displayed
    • Patient name, ID and accession number can be stored as a one-way hash, and remain searchable
    • Permission system has become more granular
    • System can now accept non-ASCII characters in protocol names etc
    • Menus have been tidied up
    • Settings file has been updated
  • Charts and interface

    • Bar chart data points sorted by frequency, value or name in ascending or descending order
    • CT chart of DLP per requested procedure type
    • CT chart of requested procedure frequency
    • CT chart of CTDIvol per study description
    • Chart data returned using AJAX to make pages more responsive
    • Chart plotting options available via Config menu
    • Charts can now be made full-screen
    • CTDIw phantom size is displayed with the CTDIvol measurement on the CT study detail page
    • Charts show a series called “Blank” when the series name is None
    • Queries for chart data now faster in most situations
    • Histograms can be disabled or enabled for bar charts
    • User-specified number of histogram bins from 2 to 40
    • Mammography chart of average glandular dose vs. compressed thickness
    • Mammography chart showing the number of studies carried out per weekday
    • Fluoroscopy chart of average DAP for each study description
    • Fluoroscopy chart of the frequency of each study description
    • Fluoroscopy chart showing the number of studies carried out per weekday
    • Context specific documentation has been added to the Docs menu
  • DICOM Networking

    • Query retrieve function is now built in to query PACS systems or modalities via the Import menu
    • Configuring and running DICOM Store SCP is available and managed in the web interface, but not recommended
    • Documentation improved
  • Imports

    • Mammography RDSRs import correctly
    • Mammography imports from images now create an accumulated AGD value per breast
    • GE Senographe DS compression now recorded correctly in Newtons for new imports
    • Philips Allura fluoroscopy RDSRs import correctly, including calculating the exposure time
    • Bi-plane fluoroscopy imports can now be displayed in the web interface
    • Patient height imports from csv now convert from cm to m - previously height was assumed to be cm and inserted into database without change. Existing height data will remain as cm value for csv imports, and m value for RDSR imports
    • Better handling of non-ASCII characters
    • Tube current is now extracted from Siemens Intevo RDSRs
  • Exports

    • Patient sex is included in all exports
    • Filters generated by navigating through charts can now be used to filter export data
    • Study description and laterality are now included in mammography exports
    • Bi-fluoroscopy studies can be exported
  • Skin dose maps

    • Skin dose maps have been withdrawn from OpenREM version 0.7.0 due to incorrect orientation calculations that need to be fixed before openSkin can be reimplemented into OpenREM

Changes since 0.7.0

Extremely minor change to the documenation links

Upgrading an OpenREM server with no internet access

Upgrading from version 0.6.0

  • Back up your database

    • For PostgreSQL you can refer to Backup the database
    • For a non-production SQLite3 database, simply make a copy of the database file
  • Stop any Celery workers

  • The 0.7.0 upgrade must be made from a 0.6.0 (or later) database, and a schema migration is required:

pip install openrem==0.7.1

In a shell/command window, move into the openrem folder:

  • Ubuntu linux: /usr/local/lib/python2.7/dist-packages/openrem/
  • Other linux: /usr/lib/python2.7/site-packages/openrem/
  • Linux virtualenv: lib/python2.7/site-packages/openrem/
  • Windows: C:\Python27\Lib\site-packages\openrem\
  • Windows virtualenv: Lib\site-packages\openrem\

Delete all numbered migration files in openrem’s remapp/migrations folder, leaving the 0002 files ending in .inactive

  • If there is no file named __init__.py in the remapp/migrations folder, please create it.
  • If you have accidentally deleted the 0002 files ending in .inactive, you can get a new copy from the bitbucket repository.
python manage.py migrate --fake-initial
python manage.py makemigrations remapp
python manage.py migrate remapp --fake

Now rename the file

remapp/migrations/0002_upgrade_0_7_from_0_6.py.inactive

to:

remapp/migrations/0002_upgrade_0_7_from_0_6.py

and then run

python manage.py migrate remapp

Note

With a large database, this may take some time!

  • Review the new openremproject/local_settings.py.example file and copy accross the logging section. Then see Log file settings in the install docs.

    If you are using PuTTY on Windows to interact with a linux server, you can select the logging configuration section of the example file with your mouse, and it will be automatically copied to the clipboard. Then open the existing local_settings.py file with nano, move the curser down to the bottom and click the right mouse button to paste.

Restart all the services!

Some of the commands and services have changed - follow the guide at Start all the services.

Upgrading from version 0.7.0 beta 7 or later

  • Stop any Celery workers
  • You will need to do a database migration.
pip install openrem==0.7.1

From the openrem folder (see above):

python manage.py makemigrations remapp
python manage.py migrate remapp
  • Review the new local_settings.py.example file and copy accross the logging section. Then see Log file settings in the install docs.

Restart all the services!

Some of the commands and services have changed - follow the guide at Start all the services.